Outputs

MEGPrep generates several output files and directories, including preprocessing results, quality control reports, and any intermediate files created during the pipeline execution. The output directory will have a predefined structure that includes:

• preprocessed/: Contains preprocessed MEG data files.

• work/: Nextflow working directory.

• artifact_report/: Contains artifact detection results.

• covariance/: Contains covariance-related files.

• forward_solution/: Contains forward model files.

• ica_report/: Contains ICA results.

• preproc_report/: Contains preprocessing reports.

• source_recon/: Contains source reconstruction data.

• trans/: Contains coregistration-related files.

This structure ensures that users can easily find and navigate to their results.